IL_8VVS_089
3D structure
- PDB id
- 8VVS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 8VVS|1|WA|U|2307
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVS_089 not in the Motif Atlas
- Geometric match to IL_7EAG_003
- Geometric discrepancy: 0.0943
- The information below is about IL_7EAG_003
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
8VVS|1|WA|C|2304
8VVS|1|WA|C|2305
8VVS|1|WA|U|2306
8VVS|1|WA|U|2307
8VVS|1|WA|G|2308
8VVS|1|WA|A|2309
8VVS|1|WA|A|2310
8VVS|1|WA|G|2311
*
8VVS|1|WA|U|2331
8VVS|1|WA|G|2332
8VVS|1|WA|G|2333
8VVS|1|WA|A|2334
8VVS|1|WA|G|2335
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain DA
- L32
- Chain X
- L26
- Chain YA
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: