IL_8VVS_091

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_091 not in the Motif Atlas

Geometric match to IL_8CRE_065

Geometric discrepancy: 0.0958

The information below is about IL_8CRE_065

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8VVS|1|WA|G|2360
8VVS|1|WA|U|2361
8VVS|1|WA|A|2362
8VVS|1|WA|G|2363
8VVS|1|WA|U|2364
8VVS|1|WA|A|2365
8VVS|1|WA|G|2366
*
8VVS|1|WA|C|3860
8VVS|1|WA|G|3861
8VVS|1|WA|A|3862
8VVS|1|WA|A|3863
8VVS|1|WA|A|3864
8VVS|1|WA|C|3865

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain O

uL22