IL_8VVS_095

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_095 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.1878

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8VVS|1|WA|G|2481
8VVS|1|WA|G|2482
8VVS|1|WA|G|2483
*
8VVS|1|WA|C|2500
8VVS|1|WA|C|2501

Current chains

Chain WA

28S rRNA

Nearby chains

Chain W

uL23

Chain YA

5.8S ribosomal RNA; 5.8S rRNA