IL_8VVS_130

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8VVS|1|WA|A|4205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_130 not in the Motif Atlas

Geometric match to IL_8P9A_325

Geometric discrepancy: 0.0693

The information below is about IL_8P9A_325

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8VVS|1|WA|G|4193
8VVS|1|WA|A|4194
*
8VVS|1|WA|U|4204
8VVS|1|WA|A|4205
8VVS|1|WA|C|4206

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

L29

Chain I

L10

Chain NA

eL42

Chain S

eL21