IL_8VVS_134

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

8VVS|1|WA|C|4351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_134 not in the Motif Atlas

Geometric match to IL_8P9A_328

Geometric discrepancy: 0.2657

The information below is about IL_8P9A_328

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8VVS|1|WA|G|4349
8VVS|1|WA|A|4350
8VVS|1|WA|C|4351
8VVS|1|WA|C|4352
*
8VVS|1|WA|G|4366
8VVS|1|WA|C|4367

Current chains

Chain WA

28S rRNA

Nearby chains

Chain K

eL13

Chain NA

eL42

Chain P

eL18

Chain Z

uL15