IL_8VVS_138

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8VVS|1|WA|U|4439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_138 not in the Motif Atlas

Geometric match to IL_8CRE_113

Geometric discrepancy: 0.1539

The information below is about IL_8CRE_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8VVS|1|WA|G|4407
8VVS|1|WA|U|4408
8VVS|1|WA|G|4409
*
8VVS|1|WA|U|4437
8VVS|1|WA|U|4438
8VVS|1|WA|U|4439
8VVS|1|WA|U|4440
8VVS|1|WA|U|4441

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain I

L10