IL_8VVS_160

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGAG

Length

19 nucleotides

Bulged bases

8VVS|1|WA|C|4759, 8VVS|1|WA|U|4760, 8VVS|1|WA|A|4766, 8VVS|1|WA|G|4872, 8VVS|1|WA|C|4873, 8VVS|1|WA|G|4875, 8VVS|1|WA|A|4878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVS|1|WA|C|4758
8VVS|1|WA|C|4759
8VVS|1|WA|U|4760
8VVS|1|WA|C|4761
8VVS|1|WA|G|4762
8VVS|1|WA|G|4763
8VVS|1|WA|A|4764
8VVS|1|WA|U|4765
8VVS|1|WA|A|4766
8VVS|1|WA|G|4767
*
8VVS|1|WA|U|4871
8VVS|1|WA|G|4872
8VVS|1|WA|C|4873
8VVS|1|WA|G|4874
8VVS|1|WA|G|4875
8VVS|1|WA|A|4876
8VVS|1|WA|G|4877
8VVS|1|WA|A|4878
8VVS|1|WA|G|4879

Current chains

Chain WA

28S rRNA

Nearby chains

Chain E

L6

Chain H

L9

Chain L

eL14

Chain N

uL13

Chain R

eL20