IL_8VVS_191

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_191 not in the Motif Atlas

Geometric match to IL_8CRE_392

Geometric discrepancy: 0.2993

The information below is about IL_8CRE_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12697.1

Basepair signature

cWW-cWW-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8VVS|1|ZA|C|188
8VVS|1|ZA|U|189
8VVS|1|ZA|G|190
8VVS|1|ZA|A|191
8VVS|1|ZA|C|192
*
8VVS|1|ZA|G|207
8VVS|1|ZA|G|208
8VVS|1|ZA|A|209
8VVS|1|ZA|U|210
8VVS|1|ZA|G|211

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain IB

S8