IL_8VVS_212

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_212 not in the Motif Atlas

Geometric match to IL_8CRE_458

Geometric discrepancy: 0.3074

The information below is about IL_8CRE_458

Detailed Annotation

Non-canonical cWW with near cWH

Broad Annotation

Non-canonical cWW with near cWH

Motif group

IL_10994.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8VVS|1|ZA|G|692
8VVS|1|ZA|A|693
8VVS|1|ZA|G|694
8VVS|1|ZA|C|695
*
8VVS|1|ZA|G|731
8VVS|1|ZA|U|732
8VVS|1|ZA|C|733
8VVS|1|ZA|C|734

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain HB

eS7

Chain WB

S15A