IL_8VVS_239

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

8VVS|1|ZA|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_239 not in the Motif Atlas

Geometric match to IL_8P9A_438

Geometric discrepancy: 0.1572

The information below is about IL_8P9A_438

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8VVS|1|ZA|U|1329
8VVS|1|ZA|G|1330
8VVS|1|ZA|C|1331
8VVS|1|ZA|A|1332
8VVS|1|ZA|U|1333
*
8VVS|1|ZA|A|1498
8VVS|1|ZA|U|1499
8VVS|1|ZA|G|1500

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain DB

S3

Chain DC

uS14

Chain KB

S10

Chain UA

Transfer RNA; tRNA

Chain UB

uS10

Chain VA

mRNA