IL_8VWQ_072

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8VWQ|1|1|A|1899, 8VWQ|1|1|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VWQ_072 not in the Motif Atlas

Geometric match to IL_8P9A_313

Geometric discrepancy: 0.0931

The information below is about IL_8P9A_313

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8VWQ|1|1|U|1841
8VWQ|1|1|G|1842
*
8VWQ|1|1|U|1898
8VWQ|1|1|A|1899
8VWQ|1|1|A|1900
8VWQ|1|1|A|1901

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 6

Elongation factor P

Chain B

50S ribosomal protein L2