IL_8VWQ_077
3D structure
- PDB id
- 8VWQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 8VWQ|1|1|A|1938, 8VWQ|1|1|U|1944, 8VWQ|1|1|U|1963
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VWQ_077 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1143
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
8VWQ|1|1|C|1934
8VWQ|1|1|G|1935
8VWQ|1|1|A|1936
8VWQ|1|1|A|1937
8VWQ|1|1|A|1938
8VWQ|1|1|U|1939
8VWQ|1|1|U|1940
8VWQ|1|1|C|1941
8VWQ|1|1|C|1942
8VWQ|1|1|U|1943
8VWQ|1|1|U|1944
8VWQ|1|1|G|1945
*
8VWQ|1|1|C|1961
8VWQ|1|1|C|1962
8VWQ|1|1|U|1963
8VWQ|1|1|G|1964
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- 50S ribosomal protein L2
Coloring options: