IL_8VWQ_097

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8VWQ|1|1|G|2576, 8VWQ|1|1|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VWQ_097 not in the Motif Atlas

Geometric match to IL_7A0S_089

Geometric discrepancy: 0.1355

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

8VWQ|1|1|C|2510
8VWQ|1|1|U|2511
8VWQ|1|1|C|2512
*
8VWQ|1|1|G|2574
8VWQ|1|1|C|2575
8VWQ|1|1|G|2576
8VWQ|1|1|A|2577
8VWQ|1|1|G|2578

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain b

50S ribosomal protein L32