IL_8VWQ_132

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VWQ_132 not in the Motif Atlas

Geometric match to IL_5J7L_020

Geometric discrepancy: 0.0726

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8VWQ|1|2|U|409
8VWQ|1|2|G|410
8VWQ|1|2|A|411
8VWQ|1|2|A|412
8VWQ|1|2|G|413
8VWQ|1|2|A|414
8VWQ|1|2|A|415
8VWQ|1|2|G|416
*
8VWQ|1|2|U|427
8VWQ|1|2|G|428
8VWQ|1|2|U|429
8VWQ|1|2|A|430
8VWQ|1|2|A|431
8VWQ|1|2|A|432
8VWQ|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4