IL_8VWQ_173

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

8VWQ|1|2|A|1492, 8VWQ|1|2|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VWQ_173 not in the Motif Atlas

Geometric match to IL_8UO6_002

Geometric discrepancy: 0.2057

The information below is about IL_8UO6_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8VWQ|1|2|5MC|1407
8VWQ|1|2|A|1408
8VWQ|1|2|C|1409
*
8VWQ|1|2|G|1491
8VWQ|1|2|A|1492
8VWQ|1|2|A|1493
8VWQ|1|2|G|1494

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 4

messenger RNA

Chain q

Small ribosomal subunit protein uS12