IL_8W2N_009

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W2N_009 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.3096

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8W2N|1|1|C|274
8W2N|1|1|C|275
8W2N|1|1|U|276
8W2N|1|1|G|277
8W2N|1|1|A|278
8W2N|1|1|A|279
8W2N|1|1|U|280
8W2N|1|1|C|281
*
8W2N|1|1|G|359
8W2N|1|1|U|360
8W2N|1|1|G|361
8W2N|1|1|A|362
8W2N|1|1|G|363

Current chains

Chain 1

23S ribosomal RNA

Nearby chains