IL_8W2N_048

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

8W2N|1|1|U|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W2N_048 not in the Motif Atlas

Geometric match to IL_5J7L_294

Geometric discrepancy: 0.2185

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8W2N|1|1|U|1415
8W2N|1|1|G|1416
*
8W2N|1|1|C|1582
8W2N|1|1|A|1583
8W2N|1|1|U|1584
8W2N|1|1|C|1585
8W2N|1|1|A|1586
8W2N|1|1|G|1587

Current chains

Chain 1

23S ribosomal RNA

Nearby chains