IL_8W2N_064

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8W2N|1|1|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W2N_064 not in the Motif Atlas

Geometric match to IL_5J7L_309

Geometric discrepancy: 0.1329

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8W2N|1|1|U|1712
8W2N|1|1|A|1713
8W2N|1|1|U|1714
8W2N|1|1|G|1715
8W2N|1|1|U|1716
8W2N|1|1|A|1717
8W2N|1|1|G|1718
*
8W2N|1|1|U|1742
8W2N|1|1|G|1743
8W2N|1|1|A|1744
8W2N|1|1|A|1745
8W2N|1|1|A|1746

Current chains

Chain 1

23S ribosomal RNA

Nearby chains