IL_8W2N_077

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAA*UCC

Length

7 nucleotides

Bulged bases

8W2N|1|1|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W2N_077 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1375

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8W2N|1|1|G|2067
8W2N|1|1|U|2068
8W2N|1|1|A|2069
8W2N|1|1|A|2070
*
8W2N|1|1|U|2441
8W2N|1|1|C|2442
8W2N|1|1|C|2443

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain L

50S ribosomal protein L15