IL_8W2N_163

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8W2N|1|2|C|1400, 8W2N|1|2|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W2N_163 not in the Motif Atlas

Geometric match to IL_8P9A_452

Geometric discrepancy: 0.0953

The information below is about IL_8P9A_452

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8W2N|1|2|C|1399
8W2N|1|2|C|1400
8W2N|1|2|G|1401
*
8W2N|1|2|C|1501
8W2N|1|2|A|1502
8W2N|1|2|A|1503
8W2N|1|2|G|1504

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

mRNA

Chain 5

Transfer RNA; tRNA