IL_8W51_090

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGUGG*CUGCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W51_090 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3973

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8W51|1|A|U|2137
8W51|1|A|G|2138
8W51|1|A|U|2139
8W51|1|A|G|2140
8W51|1|A|G|2141
*
8W51|1|A|C|2150
8W51|1|A|U|2151
8W51|1|A|G|2152
8W51|1|A|C|2153
8W51|1|A|A|2154

Current chains

Chain A

23S rRNA

Nearby chains