IL_8W51_120

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8W51|1|A|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W51_120 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.121

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

8W51|1|A|A|844
8W51|1|A|A|845
8W51|1|A|U|846
8W51|1|A|U|847
8W51|1|A|C|848
*
8W51|1|A|G|930
8W51|1|A|U|931
8W51|1|A|U|932
8W51|1|A|A|933
8W51|1|A|U|934

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L30