IL_8WHX_019
3D structure
- PDB id
- 8WHX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WHX_019 not in the Motif Atlas
- Homologous match to IL_7A0S_013
- Geometric discrepancy: 0.1276
- The information below is about IL_7A0S_013
- Detailed Annotation
- AAA cross-strand stack
- Broad Annotation
- AAA cross-strand stack
- Motif group
- IL_66798.2
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8WHX|1|A|U|699
8WHX|1|A|U|700
8WHX|1|A|A|701
8WHX|1|A|A|702
8WHX|1|A|C|703
*
8WHX|1|A|G|712
8WHX|1|A|G|713
8WHX|1|A|U|714
8WHX|1|A|A|715
8WHX|1|A|G|716
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain G
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L15
Coloring options: