IL_8WHX_032

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCUACU*AAAC

Length

10 nucleotides

Bulged bases

8WHX|1|A|U|981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_032 not in the Motif Atlas

Homologous match to IL_7RQB_029

Geometric discrepancy: 0.123

The information below is about IL_7RQB_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_02509.1

Basepair signature

cWW-tSW-cWS-cSH-tWH-R-R-cWW

Number of instances in this motif group

5

Unit IDs

8WHX|1|A|G|979
8WHX|1|A|C|980
8WHX|1|A|U|981
8WHX|1|A|A|982
8WHX|1|A|C|983
8WHX|1|A|U|984
*
8WHX|1|A|A|1024
8WHX|1|A|A|1025
8WHX|1|A|A|1026
8WHX|1|A|C|1027

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA