IL_8WHX_042

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

8WHX|1|A|C|1260, 8WHX|1|A|A|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_042 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0946

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8WHX|1|A|C|1136
8WHX|1|A|U|1137
8WHX|1|A|A|1138
8WHX|1|A|A|1139
8WHX|1|A|G|1140
8WHX|1|A|U|1141
8WHX|1|A|G|1142
*
8WHX|1|A|C|1258
8WHX|1|A|U|1259
8WHX|1|A|C|1260
8WHX|1|A|A|1261
8WHX|1|A|A|1262
8WHX|1|A|G|1263

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L13