IL_8WHX_043
3D structure
- PDB id
- 8WHX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAAAAG*CGAUAAUGUAGCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8WHX|1|A|U|1245, 8WHX|1|A|U|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WHX_043 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.1484
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8WHX|1|A|G|1142
8WHX|1|A|G|1143
8WHX|1|A|A|1144
8WHX|1|A|A|1145
8WHX|1|A|A|1146
8WHX|1|A|A|1147
8WHX|1|A|G|1148
*
8WHX|1|A|C|1242
8WHX|1|A|G|1243
8WHX|1|A|A|1244
8WHX|1|A|U|1245
8WHX|1|A|A|1246
8WHX|1|A|A|1247
8WHX|1|A|U|1248
8WHX|1|A|G|1249
8WHX|1|A|U|1250
8WHX|1|A|A|1251
8WHX|1|A|G|1252
8WHX|1|A|C|1253
8WHX|1|A|G|1254
8WHX|1|A|G|1255
8WHX|1|A|G|1256
8WHX|1|A|G|1257
8WHX|1|A|C|1258
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L13
Coloring options: