IL_8WHX_047

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

8WHX|1|A|G|1363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_047 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.08

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8WHX|1|A|C|1311
8WHX|1|A|G|1312
8WHX|1|A|U|1313
*
8WHX|1|A|A|1362
8WHX|1|A|G|1363
8WHX|1|A|U|1364
8WHX|1|A|G|1365

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain O

50S ribosomal protein L15

Chain T

50S ribosomal protein L20