IL_8WHX_073

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUAAG*CCCAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_073 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.2068

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8WHX|1|A|U|1937
8WHX|1|A|G|1938
8WHX|1|A|U|1939
8WHX|1|A|A|1940
8WHX|1|A|A|1941
8WHX|1|A|G|1942
*
8WHX|1|A|C|1952
8WHX|1|A|C|1953
8WHX|1|A|C|1954
8WHX|1|A|A|1955
8WHX|1|A|A|1956
8WHX|1|A|G|1957

Current chains

Chain A

23S rRNA

Nearby chains