IL_8WHX_076

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

8WHX|1|A|G|2018, 8WHX|1|A|U|2033, 8WHX|1|A|U|2037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_076 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0799

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8WHX|1|A|U|2015
8WHX|1|A|G|2016
8WHX|1|A|C|2017
8WHX|1|A|G|2018
8WHX|1|A|A|2019
8WHX|1|A|A|2020
8WHX|1|A|G|2021
*
8WHX|1|A|C|2030
8WHX|1|A|G|2031
8WHX|1|A|A|2032
8WHX|1|A|U|2033
8WHX|1|A|G|2034
8WHX|1|A|U|2035
8WHX|1|A|A|2036
8WHX|1|A|U|2037
8WHX|1|A|A|2038

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA