IL_8WHX_081

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGGACC*GAGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_081 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.2825

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8WHX|1|A|A|2073
8WHX|1|A|G|2074
8WHX|1|A|G|2075
8WHX|1|A|A|2076
8WHX|1|A|C|2077
8WHX|1|A|C|2078
*
8WHX|1|A|G|2105
8WHX|1|A|A|2106
8WHX|1|A|G|2107
8WHX|1|A|A|2108
8WHX|1|A|A|2109
8WHX|1|A|U|2110

Current chains

Chain A

23S rRNA

Nearby chains