IL_8WHX_097

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8WHX|1|A|U|2355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_097 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.309

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8WHX|1|A|C|2352
8WHX|1|A|U|2353
8WHX|1|A|G|2354
8WHX|1|A|U|2355
8WHX|1|A|G|2356
8WHX|1|A|A|2357
8WHX|1|A|A|2358
8WHX|1|A|G|2359
*
8WHX|1|A|U|2378
8WHX|1|A|G|2379
8WHX|1|A|G|2380
8WHX|1|A|A|2381
8WHX|1|A|G|2382

Current chains

Chain A

23S rRNA

Nearby chains