3D structure

PDB id
8WHX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
AUC*GGUUU
Length
8 nucleotides
Bulged bases
8WHX|1|A|U|2715
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8WHX_106 not in the Motif Atlas
Geometric match to IL_5J7L_337
Geometric discrepancy: 0.299
The information below is about IL_5J7L_337
Detailed Annotation
Major groove minor groove platform with extra cWW
Broad Annotation
Major groove minor groove platform with extra cWW
Motif group
IL_51387.3
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
21

Unit IDs

8WHX|1|A|A|2683
8WHX|1|A|U|2684
8WHX|1|A|C|2685
*
8WHX|1|A|G|2713
8WHX|1|A|G|2714
8WHX|1|A|U|2715
8WHX|1|A|U|2716
8WHX|1|A|U|2717

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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