IL_8WHX_196

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8WHX|1|a|U|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_196 not in the Motif Atlas

Geometric match to IL_7RQB_038

Geometric discrepancy: 0.3326

The information below is about IL_7RQB_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

8WHX|1|a|C|1432
8WHX|1|a|C|1433
*
8WHX|1|a|G|1436
8WHX|1|a|U|1437
8WHX|1|a|G|1438

Current chains

Chain a

16S rRNA

Nearby chains