IL_8WI7_041

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

8WI7|1|A|C|1260, 8WI7|1|A|A|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WI7_041 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.1136

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8WI7|1|A|C|1136
8WI7|1|A|U|1137
8WI7|1|A|A|1138
8WI7|1|A|A|1139
8WI7|1|A|G|1140
8WI7|1|A|U|1141
8WI7|1|A|G|1142
*
8WI7|1|A|C|1258
8WI7|1|A|U|1259
8WI7|1|A|C|1260
8WI7|1|A|A|1261
8WI7|1|A|A|1262
8WI7|1|A|G|1263

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6

Chain M

50S ribosomal protein L13