IL_8WI7_126
3D structure
- PDB id
- 8WI7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUGAUAC*GAAAAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WI7_126 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.0978
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8WI7|1|B|C|72
8WI7|1|B|G|73
8WI7|1|B|A|74
8WI7|1|B|U|75
8WI7|1|B|G|76
8WI7|1|B|A|77
8WI7|1|B|U|78
8WI7|1|B|A|79
8WI7|1|B|C|80
*
8WI7|1|B|G|95
8WI7|1|B|A|96
8WI7|1|B|A|97
8WI7|1|B|A|98
8WI7|1|B|A|99
8WI7|1|B|G|100
8WI7|1|B|U|101
8WI7|1|B|A|102
8WI7|1|B|G|103
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: