IL_8WI7_145

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAUGACG*UGUAAAC

Length

15 nucleotides

Bulged bases

8WI7|1|a|U|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WI7_145 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1451

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8WI7|1|a|G|409
8WI7|1|a|G|410
8WI7|1|a|A|411
8WI7|1|a|U|412
8WI7|1|a|G|413
8WI7|1|a|A|414
8WI7|1|a|C|415
8WI7|1|a|G|416
*
8WI7|1|a|U|427
8WI7|1|a|G|428
8WI7|1|a|U|429
8WI7|1|a|A|430
8WI7|1|a|A|431
8WI7|1|a|A|432
8WI7|1|a|C|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S4