IL_8WI7_157

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WI7_157 not in the Motif Atlas

Homologous match to IL_6CZR_140

Geometric discrepancy: 0.266

The information below is about IL_6CZR_140

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.5

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

8WI7|1|a|U|637
8WI7|1|a|A|638
*
8WI7|1|a|U|727
8WI7|1|a|A|728
8WI7|1|a|A|729

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S8

Chain p

30S ribosomal protein S15