IL_8WI7_165

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8WI7|1|a|A|1377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WI7_165 not in the Motif Atlas

Homologous match to IL_5J7L_039

Geometric discrepancy: 0.099

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8WI7|1|a|G|904
8WI7|1|a|A|905
*
8WI7|1|a|U|1376
8WI7|1|a|A|1377
8WI7|1|a|C|1378

Current chains

Chain a

16S rRNA

Nearby chains

Chain f

30S ribosomal protein S5

Chain v

30S ribosomal protein S22