IL_8WI9_028

3D structure

PDB id

8WI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WI9_028 not in the Motif Atlas

Homologous match to IL_4LFB_025

Geometric discrepancy: 0.1196

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

29

Unit IDs

8WI9|1|a|G|577
8WI9|1|a|U|578
*
8WI9|1|a|A|620
8WI9|1|a|U|621
8WI9|1|a|A|622
8WI9|1|a|C|623

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S8

Chain r

30S ribosomal protein S17