IL_8WI9_029

3D structure

PDB id

8WI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAAAC*GCGUG

Length

12 nucleotides

Bulged bases

8WI9|1|a|U|612

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WI9_029 not in the Motif Atlas

Geometric match to IL_8C3A_433

Geometric discrepancy: 0.301

The information below is about IL_8C3A_433

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83023.1

Basepair signature

cWW-R-L-R-L-R-L-L-L-L

Number of instances in this motif group

1

Unit IDs

8WI9|1|a|U|585
8WI9|1|a|G|586
8WI9|1|a|A|587
8WI9|1|a|A|588
8WI9|1|a|A|589
8WI9|1|a|A|590
8WI9|1|a|C|591
*
8WI9|1|a|G|609
8WI9|1|a|C|610
8WI9|1|a|G|611
8WI9|1|a|U|612
8WI9|1|a|G|613

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S8

Chain q

30S ribosomal protein S16