IL_8WIB_006

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAGUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIB_006 not in the Motif Atlas

Geometric match to IL_4V9F_006

Geometric discrepancy: 0.1024

The information below is about IL_4V9F_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

8WIB|1|A|G|187
8WIB|1|A|G|188
8WIB|1|A|A|189
8WIB|1|A|A|190
8WIB|1|A|G|191
8WIB|1|A|U|192
8WIB|1|A|G|193
*
8WIB|1|A|C|200
8WIB|1|A|U|201
8WIB|1|A|C|202
8WIB|1|A|A|203
8WIB|1|A|G|204
8WIB|1|A|U|205
8WIB|1|A|A|206
8WIB|1|A|C|207

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain 8

50S ribosomal protein L35

Chain O

50S ribosomal protein L15