IL_8WIB_007

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIB_007 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.1067

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8WIB|1|A|U|239
8WIB|1|A|G|240
8WIB|1|A|A|241
8WIB|1|A|G|242
8WIB|1|A|U|243
8WIB|1|A|A|244
8WIB|1|A|G|245
*
8WIB|1|A|C|253
8WIB|1|A|G|254
8WIB|1|A|A|255
8WIB|1|A|A|256
8WIB|1|A|A|257
8WIB|1|A|G|258

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain O

50S ribosomal protein L15