IL_8WIB_044

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8WIB|1|A|U|1151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIB_044 not in the Motif Atlas

Homologous match to IL_7A0S_038

Geometric discrepancy: 0.1782

The information below is about IL_7A0S_038

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_30229.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

9

Unit IDs

8WIB|1|A|G|1149
8WIB|1|A|A|1150
8WIB|1|A|U|1151
8WIB|1|A|G|1152
*
8WIB|1|A|C|1239
8WIB|1|A|G|1240
8WIB|1|A|C|1241

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6