IL_8WIB_062

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGUAG*UGAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIB_062 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3788

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

8WIB|1|A|C|1694
8WIB|1|A|U|1695
8WIB|1|A|G|1696
8WIB|1|A|U|1697
8WIB|1|A|A|1698
8WIB|1|A|G|1699
*
8WIB|1|A|U|1735
8WIB|1|A|G|1736
8WIB|1|A|A|1737
8WIB|1|A|G|1738
8WIB|1|A|A|1739
8WIB|1|A|G|1740

Current chains

Chain A

23S rRNA

Nearby chains