IL_8WIB_101

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIB_101 not in the Motif Atlas

Geometric match to IL_7RQB_009

Geometric discrepancy: 0.1699

The information below is about IL_7RQB_009

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

8WIB|1|A|G|2678
8WIB|1|A|G|2679
*
8WIB|1|A|C|2720
8WIB|1|A|A|2721
8WIB|1|A|C|2722

Current chains

Chain A

23S rRNA

Nearby chains