IL_8WIB_103

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIB_103 not in the Motif Atlas

Geometric match to IL_4WF9_092

Geometric discrepancy: 0.2905

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8WIB|1|A|A|2683
8WIB|1|A|U|2684
8WIB|1|A|C|2685
*
8WIB|1|A|G|2713
8WIB|1|A|G|2714
8WIB|1|A|U|2715
8WIB|1|A|U|2716
8WIB|1|A|U|2717

Current chains

Chain A

23S rRNA

Nearby chains