IL_8WIB_105

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIB_105 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.1947

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8WIB|1|A|C|2690
8WIB|1|A|C|2691
8WIB|1|A|A|2692
8WIB|1|A|A|2693
8WIB|1|A|G|2694
*
8WIB|1|A|C|2704
8WIB|1|A|G|2705
8WIB|1|A|A|2706
8WIB|1|A|C|2707
8WIB|1|A|G|2708

Current chains

Chain A

23S rRNA

Nearby chains