IL_8WIB_144

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAUGACG*UGUAAAC

Length

15 nucleotides

Bulged bases

8WIB|1|a|U|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIB_144 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1479

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8WIB|1|a|G|409
8WIB|1|a|G|410
8WIB|1|a|A|411
8WIB|1|a|U|412
8WIB|1|a|G|413
8WIB|1|a|A|414
8WIB|1|a|C|415
8WIB|1|a|G|416
*
8WIB|1|a|U|427
8WIB|1|a|G|428
8WIB|1|a|U|429
8WIB|1|a|A|430
8WIB|1|a|A|431
8WIB|1|a|A|432
8WIB|1|a|C|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S4