IL_8WIB_198

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIB_198 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0748

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8WIB|1|A|G|1884
8WIB|1|A|G|1885
8WIB|1|A|A|1886
8WIB|1|A|A|1887
8WIB|1|A|C|1888
8WIB|1|A|U|1889
8WIB|1|A|C|1890
8WIB|1|A|G|1891
8WIB|1|A|G|1892
*
8WIB|1|A|C|2214
8WIB|1|A|U|2215
8WIB|1|A|G|2216
8WIB|1|A|U|2217
8WIB|1|A|C|2218

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L3

Chain N

50S ribosomal protein L14