IL_8WIC_004

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGAG*CGUUGAUC

Length

13 nucleotides

Bulged bases

8WIC|1|A|U|98

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_004 not in the Motif Atlas

Homologous match to IL_7RQB_004

Geometric discrepancy: 0.126

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

8WIC|1|A|G|78
8WIC|1|A|G|79
8WIC|1|A|G|80
8WIC|1|A|A|81
8WIC|1|A|G|82
*
8WIC|1|A|C|95
8WIC|1|A|G|96
8WIC|1|A|U|97
8WIC|1|A|U|98
8WIC|1|A|G|99
8WIC|1|A|A|100
8WIC|1|A|U|101
8WIC|1|A|C|102

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L29

Chain X

50S ribosomal protein L24